hairpin_modules

Documentation

Index

• type HairpinModule
  • func AddDownstreamModulesSlidingFreeEnergy(hairpinModules []*HairpinModule) []*HairpinModule
  • func HairpinModules(structures []interface{}) (ret []*HairpinModule)
  • func (hairpinModule *HairpinModule) CalculateDistalLength() int
  • func (hairpinModule *HairpinModule) CalculateProximalLength() int
  • func (hairpinModule *HairpinModule) CalculateSurfaceArea() int
  • func (hairpinModule *HairpinModule) FivePrimeIdx() int
  • func (hairpinModule *HairpinModule) ThreePrimeIdx() int

Types

type HairpinModule

type HairpinModule struct {
	HairpinHeight int

	Hairpin Hairpin

	StandbyFreeEnergyWithoutSliding float64
	StandbyFreeEnergy               float64
	SlidingFreeEnergy               float64
	DistortionFreeEnergy            float64
	UnfoldingFreeEnergy             float64
	// contains filtered or unexported fields
}

func AddDownstreamModulesSlidingFreeEnergy

func AddDownstreamModulesSlidingFreeEnergy(hairpinModules []*HairpinModule) []*HairpinModule

func HairpinModules

func HairpinModules(structures []interface{}) (ret []*HairpinModule)

func (*HairpinModule) CalculateDistalLength

func (hairpinModule *HairpinModule) CalculateDistalLength() int

func (*HairpinModule) CalculateProximalLength

func (hairpinModule *HairpinModule) CalculateProximalLength() int

func (*HairpinModule) CalculateSurfaceArea

func (hairpinModule *HairpinModule) CalculateSurfaceArea() int

func (*HairpinModule) FivePrimeIdx

func (hairpinModule *HairpinModule) FivePrimeIdx() int

func (*HairpinModule) ThreePrimeIdx

func (hairpinModule *HairpinModule) ThreePrimeIdx() int