checks

Documentation

Index

• func GcContent(sequence string) float64
• func IsPalindromic(sequence string) bool
• func IsValidDotBracketStructure(structure string) (bool, error)
• func IsValidRNA(sequence string) (bool, error)

Functions

func GcContent

func GcContent(sequence string) float64

GC content calculates the percentage of G and C base pairs content in a given sequence

func IsPalindromic

func IsPalindromic(sequence string) bool

IsPalindromic accepts a sequence of even length and returns if it is palindromic. More here - https://en.wikipedia.org/wiki/Palindromic_sequence

func IsValidDotBracketStructure

func IsValidDotBracketStructure(structure string) (bool, error)

IsValidDotBracketStructure accepts a string and checks if uses valid dot-bracket notation. See the `secondary_structure` package for more info on dot-bracket notation.

func IsValidRNA

func IsValidRNA(sequence string) (bool, error)

IsValidRNA accepts a string and checks if it is a valid RNA sequence.