multi

Documentation

Overview

Package to read and auto-detect format of fasta & fastq files

Index

• type Reader
  • func NewReader(f file.SectionReader) *Reader
  • func (r *Reader) DetermineFormat() error
  • func (r *Reader) Format(s *seq.Seq, w io.Writer) (n int, err error)
  • func (r *Reader) GetReadOffset() (n int, err error)
  • func (r *Reader) Read() (*seq.Seq, error)
  • func (r *Reader) SeekChunk(carryOver int64, lastIndex bool) (n int64, err error)

Types

type Reader

type Reader struct {
	// contains filtered or unexported fields
}

func NewReader

func NewReader(f file.SectionReader) *Reader

func (*Reader) DetermineFormat

func (r *Reader) DetermineFormat() error

func (*Reader) Format

func (r *Reader) Format(s *seq.Seq, w io.Writer) (n int, err error)

func (*Reader) GetReadOffset

func (r *Reader) GetReadOffset() (n int, err error)

func (*Reader) Read

func (r *Reader) Read() (*seq.Seq, error)

func (*Reader) SeekChunk

func (r *Reader) SeekChunk(carryOver int64, lastIndex bool) (n int64, err error)