seq

Documentation

Overview

Package contains interfaces for fasta & fastq & and multi packages

Index

• type ReadFormater
• type ReadRewinder
• type Reader
• type Seq
  • func New(id []byte, seq []byte, qual []byte) *Seq

Types

type ReadFormater

type ReadFormater interface {
	Read() (*Seq, error)
	Format(*Seq, io.Writer) (int, error)
}

type ReadRewinder

type ReadRewinder interface {
	Read() (*Seq, error)
	ReadRaw(p []byte) (int, error)
	GetReadOffset() (int, error)
	SeekChunk(int64) (int64, error)
	Rewind() error
}

type Reader

type Reader interface {
	Read() (*Seq, error)
	ReadRaw(p []byte) (int, error)
	GetReadOffset() (int, error)
	SeekChunk(int64) (int64, error)
}

type Seq

type Seq struct {
	ID   []byte
	Seq  []byte
	Qual []byte
}

func New

func New(id []byte, seq []byte, qual []byte) *Seq