seqfilter

Documentation

Index

• func SeqPasses(seq *Seq, opts *SeqFilterOptions) bool
• type SeqFilterError
  • func (e *SeqFilterError) Error() string
• type SeqFilterOptions

Functions

func SeqPasses

func SeqPasses(seq *Seq, opts *SeqFilterOptions) bool

Types

type SeqFilterError

type SeqFilterError struct {
	Filter  string
	Problem string
}

func (*SeqFilterError) Error

func (e *SeqFilterError) Error() string

type SeqFilterOptions

type SeqFilterOptions struct {
	MinLength          bool
	MinLengthValue     int
	MaxLength          bool
	MaxLengthValue     int
	AvgVal             bool
	MinAvgVal          float32
	SlidingWin         bool
	SlidingWinSize     int
	SlidingWinMinScore int
	NumberOfNs         bool
	MaxNumberOfNs      int
	HomopolymerRun     bool
	MaxHomopolymerRun  int
}