mzidentml

Documentation

Index

• Variables
• type Identification
• type MzIdentML
  • func Read(reader io.Reader) (MzIdentML, error)
  • func (m *MzIdentML) Ident(i int) (Identification, error)
  • func (m *MzIdentML) NumIdents() int

Variables

var (
	ErrInvalidIdentIndex = errors.New("mzIdentML: invalid identification index")
)

Types

type Identification

type Identification struct {
	PepSeq        string
	PepID         string
	Charge        int
	ModMass       float64
	SpecID        string
	RetentionTime float64
	Cv            []cvParam
}

type MzIdentML

type MzIdentML struct {
	// contains filtered or unexported fields
}

MzIdentML holds only the part of mzIdentML files in which we are interested

func Read

func Read(reader io.Reader) (MzIdentML, error)

Read reads mzIdentML content from io.reader TODO: Handle incorrect mzID files which have the first letter of the MzIdentML in lower case

func (*MzIdentML) Ident

func (m *MzIdentML) Ident(i int) (Identification, error)

func (*MzIdentML) NumIdents

func (m *MzIdentML) NumIdents() int