Versions in this module Expand all Collapse all v1 v1.0.1 May 1, 2024 v1.0.0 Aug 25, 2023 Changes in this version + var DefaultScoreMatrix = [][]int64 + var HoxD55ScoreMatrix = [][]int64 + var HumanChimpTwoScoreMatrix = [][]int64 + var MouseRatScoreMatrix = [][]int64 + func AllSeqAffine(records []fasta.Fasta, scoreMatrix [][]int64, gapOpen int64, gapExtend int64) []fasta.Fasta + func AllSeqAffineChunk(records []fasta.Fasta, scoreMatrix [][]int64, gapOpen int64, gapExtend int64, ...) []fasta.Fasta + func DrawAlignedChunks(aln []fasta.Fasta, chunkSize int, chunkPixelWidth int, chunkPixelHeight int) (*image.RGBA, error) + func GoAffineGapLocalEngine(scores [][]int64, gapOpen int64, gapExtend int64) (inputs chan<- TargetQueryPair, outputs <-chan TargetQueryPair) + func LocalView(alpha []dna.Base, beta []dna.Base, operations []Cigar, maxI int64) string + func PrintCigar(operations []Cigar) string + func View(alpha []dna.Base, beta []dna.Base, operations []Cigar) string + type Cigar struct + Op ColType + RunLength int64 + func AffineGap(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapOpen int64, ...) (int64, []Cigar) + func AffineGapChunk(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapOpen int64, ...) (int64, []Cigar) + func AffineGapLocal(target []dna.Base, query []dna.Base, scores [][]int64, gapOpen int64, ...) (int64, []Cigar) + func AffineGap_customizeCheckersize(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapOpen int64, ...) (int64, []Cigar) + func AffineGap_highMem(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapOpen int64, ...) (int64, []Cigar) + func ConstGap(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapPen int64) (int64, []Cigar) + func ConstGap_customizeCheckersize(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapPen int64, ...) (int64, []Cigar) + func ConstGap_highMem(alpha []dna.Base, beta []dna.Base, scores [][]int64, gapPen int64) (int64, []Cigar) + type ColType uint8 + const ColD + const ColI + const ColM + type TargetQueryPair struct + Cigar []Cigar + Query []dna.Base + Score int64 + Target []dna.Base