cwl

package

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Versions in this module

v0

v0.9.70-dev

Oct 8, 2018

v0.9.68

Jun 6, 2018

v0.9.67

Apr 24, 2018

Changes in this version

+ func AddRequirement(new_r Requirement, old_array_ptr *[]Requirement) (new_array_ptr *[]Requirement, err error)

+ func Add_to_collection_deprecated(collection *CWL_collection, object_array CWL_object_array) (err error)

+ func DeleteRequirement(requirement_class string, old_array_ptr *[]Requirement) (new_array_ptr *[]Requirement, err error)

+ func GetSecondaryFilesArray(original interface{}) (array []interface{}, err error)

+ func NewExpressionToolOutputParameterArray(original interface{}, schemata []CWLType_Type) (new_array_ptr *[]ExpressionToolOutputParameter, err error)

+ func NewNamed_CWL_object_array(original interface{}, cwl_version CWLVersion) (array Named_CWL_object_array, schemata []CWLType_Type, err error)

+ func NewNamed_CWL_object_from_interface(original interface{}, cwl_version CWLVersion) (x Named_CWL_object, schemata []CWLType_Type, err error)

+ func NewSchemaDefRequirement(original interface{}) (r *SchemaDefRequirement, schemata []CWLType_Type, err error)

+ func NormalizeOutputParameter(original_map map[string]interface{}) (err error)

type Array

+ func (c *Array) Is_CWL_object()

type ArraySchema

+ func (c *ArraySchema) GetId() string

type Boolean

+ func (b *Boolean) Is_CWL_object()

type CWLType_Type

+ func GetProcess(original interface{}, collection *CWL_collection, CwlVersion CWLVersion, ...) (process interface{}, schemata []CWLType_Type, err error)

+ GetId func() string

type CWLType_Type_Basic

+ const CWL_Any

+ const CWL_pointer

+ const CWL_stdin

+ func (s CWLType_Type_Basic) GetId() string

+ type CWL_class interface

+ GetClass func() string

+ type CWL_class_Impl struct

+ Class string

+ func (c *CWL_class_Impl) GetClass() string

type CWL_collection

+ ExpressionTools map[string]*ExpressionTool

+ Schemata map[string]CWLType_Type

+ func (c CWL_collection) AddArray(object_array Named_CWL_object_array) (err error)

+ func (c CWL_collection) AddSchemata(obj []CWLType_Type) (err error)

+ func (c CWL_collection) GetExpressionTool(id string) (obj *ExpressionTool, err error)

+ func (c CWL_collection) GetSchemata() (obj []CWLType_Type, err error)

+ type CWL_id interface

+ GetId func() string

+ SetId func(string)

+ type CWL_id_Impl struct

+ Id string

+ func (c *CWL_id_Impl) GetId() string

+ func (c *CWL_id_Impl) SetId(id string)

type CWL_object

+ func CreateListingArray(original interface{}) (array []CWL_object, err error)

+ func NewListingFromInterface(original interface{}) (obj CWL_object, err error)

+ Is_CWL_object func()

type CWL_object_Impl

+ func (c *CWL_object_Impl) Is_CWL_object()

+ type CommandInputArraySchema struct

+ InputBinding *CommandLineBinding

+ func NewCommandInputArraySchema() (coas *CommandInputArraySchema)

+ func NewCommandInputArraySchemaFromInterface(original interface{}, schemata []CWLType_Type) (coas *CommandInputArraySchema, err error)

+ func (c *CommandInputArraySchema) GetId() string

+ func (c *CommandInputArraySchema) Type2String() string

+ type CommandInputRecordField struct

+ func CreateCommandInputRecordFieldArray(native []interface{}, schemata []CWLType_Type) (irfa []CommandInputRecordField, err error)

+ func NewCommandInputRecordField(native interface{}, schemata []CWLType_Type) (crf *CommandInputRecordField, err error)

+ type CommandInputRecordSchema struct

+ Fields []CommandInputRecordField

+ func NewCommandInputRecordSchema(native_map map[string]interface{}) (cirs *CommandInputRecordSchema, err error)

+ func NewCommandInputRecordSchemaFromInterface(native interface{}, schemata []CWLType_Type) (cirs *CommandInputRecordSchema, err error)

type CommandLineTool

+ Stderr string

type CommandOutputArraySchema

+ func (c *CommandOutputArraySchema) GetId() string

type CommandOutputEnumSchema

+ func (c *CommandOutputEnumSchema) GetId() string

type CommandOutputRecordSchema

+ func (c *CommandOutputRecordSchema) GetId() string

+ type Dirent struct

+ Entry Expression

+ Entryname Expression

+ Writable bool

+ func NewDirentFromInterface(id string, original interface{}) (dirent *Dirent, err error)

type Double

+ func (i *Double) Is_CWL_object()

type Enum

+ func NewEnum(id string, value string) (s *Enum)

+ func NewEnumFromInterface(id string, native interface{}) (s *Enum, err error)

+ func NewEnumFromstring(value string) (s *Enum)

+ func (s *Enum) GetId() string

+ func (s *Enum) GetType() CWLType_Type

+ func (s *Enum) Is_CWL_minimal()

+ func (s *Enum) Is_CWL_object()

+ func (s *Enum) SetId(i string)

+ func (s *Enum) String() string

+ type EnumSchema struct

+ Label string

+ Name string

+ Symbols []string

+ Type string

+ func NewEnumSchemaFromInterface(original interface{}) (es EnumSchema, err error)

+ func (s EnumSchema) GetId() string

+ func (s EnumSchema) Is_Type()

+ func (s EnumSchema) Type2String() string

type EnvVarRequirement

+ EnvDef []EnvironmentDef

type EnvironmentDef

+ EnvName string

+ EnvValue Expression

+ func GetEnfDefArray(original interface{}) (array []EnvironmentDef, err error)

+ func NewEnvironmentDefFromInterface(original interface{}) (enfDev EnvironmentDef, err error)

type Expression

+ func NewExpressionFromString(original string) (expression *Expression, err error)

+ type ExpressionTool struct

+ CwlVersion CWLVersion

+ Doc string

+ Expression Expression

+ Hints []Requirement

+ Inputs []InputParameter

+ Label string

+ Outputs []ExpressionToolOutputParameter

+ Requirements *[]Requirement

+ func NewExpressionTool(original interface{}, CwlVersion CWLVersion, schemata []CWLType_Type) (et *ExpressionTool, err error)

+ type ExpressionToolOutputParameter struct

+ func NewExpressionToolOutputParameter(original interface{}, schemata []CWLType_Type) (wop *ExpressionToolOutputParameter, err error)

type Float

+ func (i *Float) Is_CWL_object()

type InlineJavascriptRequirement

+ func NewInlineJavascriptRequirementFromInterface(original interface{}) (r *InlineJavascriptRequirement, err error)

type InputArraySchema

+ func (c *InputArraySchema) GetId() string

+ type InputEnumSchema struct

+ InputBinding *CommandLineBinding

+ func NewInputEnumSchemaFromInterface(original interface{}) (ies *InputEnumSchema, err error)

+ type InputRecordField struct

+ func CreateInputRecordFieldArray(native []interface{}, schemata []CWLType_Type) (irfa []InputRecordField, err error)

+ func NewInputRecordField(native interface{}, schemata []CWLType_Type) (irf *InputRecordField, err error)

+ type InputRecordSchema struct

+ Fields []InputRecordField

+ InputBinding *CommandLineBinding

+ func NewInputRecordSchema(irs_map map[string]interface{}) (irs *InputRecordSchema, err error)

+ func NewInputRecordSchemaFromInterface(native interface{}, schemata []CWLType_Type) (irs *InputRecordSchema, err error)

type Int

+ func (i *Int) Is_CWL_object()

+ type Long int64

+ func NewLong(value int64) (i *Long)

+ func NewLongFromInterface(id string, native interface{}) (i *Long, err error)

+ func (i *Long) GetClass() string

+ func (i *Long) GetId() string

+ func (i *Long) GetType() CWLType_Type

+ func (i *Long) Is_CWL_minimal()

+ func (i *Long) Is_CWL_object()

+ func (i *Long) SetId(x string)

+ func (i *Long) String() string

+ type Named_CWL_object struct

+ Value CWL_object

+ func NewNamed_CWL_object(id string, value CWL_object) Named_CWL_object

+ type Named_CWL_object_array []Named_CWL_object

type Null

+ func (i *Null) GetId() string

+ func (i *Null) GetType() CWLType_Type

+ func (i *Null) Is_CWL_minimal()

+ func (i *Null) Is_CWL_object()

+ func (i *Null) SetId(x string)

+ func (n *Null) GetBSON() (result interface{}, err error)

+ func (n *Null) MarshalJSON() (b []byte, err error)

+ func (n *Null) MarshalYAML() (i interface{}, err error)

type OutputArraySchema

+ func (c OutputArraySchema) GetId() string

+ func (c OutputArraySchema) Is_Type()

+ type OutputParameter struct

+ Format Expression

+ Id string

+ Label string

+ OutputBinding *CommandOutputBinding

+ SecondaryFiles []Expression

+ Streamable bool

+ Type []interface{}

+ type Pointer string

+ func NewPointer(id string, value string) (s *Pointer)

+ func NewPointerFromInterface(id string, native interface{}) (s *Pointer, err error)

+ func NewPointerFromstring(value string) (s *Pointer)

+ func (c *Pointer) Is_Type()

+ func (c *Pointer) Type2String() string

+ func (s *Pointer) GetId() string

type Record

+ func (r *Record) GetId() string

+ func (r *Record) GetType() CWLType_Type

+ func (r *Record) Is_CWL_object()

+ func (r *Record) Is_Type()

+ func (r *Record) SetId(id string)

+ func (r *Record) Type2String() string

+ type RecordField struct

+ Doc string

+ InputBinding *CommandLineBinding

+ Label string

+ Name string

+ Type []CWLType_Type

+ func NewRecordFieldFromInterface(native interface{}, schemata []CWLType_Type) (rf *RecordField, err error)

+ type RecordSchema struct

+ Label string

+ Name string

+ Type CWLType_Type

+ func NewRecordSchema(native_map map[string]interface{}) (rs *RecordSchema, err error)

+ func (r *RecordSchema) GetId() string

+ func (r *RecordSchema) Is_Type()

+ func (r *RecordSchema) Type2String() string

type Requirement

+ func GetRequirement(r_name string, array_ptr *[]Requirement) (requirement *Requirement, err error)

+ type ResourceRequirement struct

+ CoresMax int

+ CoresMin int

+ OutdirMax int

+ OutdirMin int

+ RamMax int

+ RamMin int

+ TmpdirMax int

+ TmpdirMin int

+ func NewResourceRequirement(original interface{}) (r *ResourceRequirement, err error)

+ func (c ResourceRequirement) GetId() string

+ type SchemaDefRequirement struct

+ Types []interface{}

+ func (c SchemaDefRequirement) GetId() string

+ type ShellCommandRequirement struct

+ func NewShellCommandRequirement(original interface{}) (r *ShellCommandRequirement, err error)

+ func (c ShellCommandRequirement) GetId() string

type ShockRequirement

+ Shock_api_url string

+ func GetShockRequirement(array_ptr *[]Requirement) (shock_requirement *ShockRequirement, err error)

+ func NewShockRequirementFromInterface(original interface{}) (r *ShockRequirement, err error)

type String

+ func (s *String) Is_CWL_object()

type Workflow

+ func NewWorkflowEmpty() (w Workflow)

v0.9.66

Mar 5, 2018

v0.9.65

Nov 3, 2017

v0.9.62

Nov 3, 2017

Changes in this version

+ const CWL_CommandLineTool

+ const CWL_Workflow

+ const CWL_WorkflowStepInput

+ var ValidClassMap = map[string]string

+ var ValidTypeMap = map[CWLType_Type_Basic]CWLType_Type_Basic

+ var Valid_Classes = []string

+ var Valid_Types = []CWLType_Type_Basic

+ func Add_to_collection(collection *CWL_collection, object_array CWL_object_array) (err error)

+ func GetClass(native interface{}) (class string, err error)

+ func GetId(native interface{}) (id string, err error)

+ func GetProcessName(p interface{}) (process_name string, err error)

+ func IsValidClass(native_str string) (result string, ok bool)

+ func MakeStringMap(v interface{}) (result interface{}, err error)

+ func NewExpressionArray(original interface{}) (expressions *[]Expression, err error)

+ func NewInputParameterType_dep(original interface{}) (ipt_ptr interface{}, err error)

+ func TypeIsCorrect(allowed_types []CWLType_Type, object CWLType) (ok bool, err error)

+ func TypeIsCorrectSingle(schema CWLType_Type, object CWLType) (ok bool, err error)

+ type Array []CWLType

+ func NewArray(id string, native interface{}) (array_ptr *Array, err error)

+ func (c *Array) GetClass() string

+ func (c *Array) GetId() string

+ func (c *Array) GetType() CWLType_Type

+ func (c *Array) Is_CWL_minimal()

+ func (c *Array) SetId(string)

+ func (c *Array) String() string

+ type ArraySchema struct

+ Items []CWLType_Type

+ Label string

+ Type string

+ func NewArraySchema() *ArraySchema

+ func (c *ArraySchema) Is_Type()

+ func (c *ArraySchema) Type2String() string

+ type BaseRequirement struct

+ Class string

+ func (c BaseRequirement) GetClass() string

type Boolean

+ func NewBoolean(id string, value bool) (b *Boolean)

+ func NewBooleanFromInterface(id string, native interface{}) (b *Boolean, err error)

+ func NewBooleanFrombool(value bool) (b *Boolean)

+ func (b *Boolean) GetType() CWLType_Type

+ func (b *Boolean) Is_CWL_minimal()

type CWLType

+ func NewCWLTypeByClass(class string, id string, native interface{}) (cwl_type CWLType, err error)

+ GetType func() CWLType_Type

+ String func() string

type CWLType_Impl

+ Type CWLType_Type

+ func (c *CWLType_Impl) GetType() CWLType_Type

+ func (c *CWLType_Impl) Is_CWLType()

+ func (c *CWLType_Impl) Is_CWL_minimal()

+ type CWLType_Type interface

+ Is_Type func()

+ Type2String func() string

+ func NewCWLType_Type(native interface{}, context string) (result CWLType_Type, err error)

+ func NewCWLType_TypeArray(native interface{}, context string) (result []CWLType_Type, err error)

+ func NewCWLType_TypeFromString(native string) (result CWLType_Type, err error)

+ func NewCommandInputParameterTypeArray(original interface{}) (result []CWLType_Type, err error)

+ type CWLType_Type_Basic string

+ const CWL_Directory

+ const CWL_array

+ const CWL_enum

+ const CWL_record

+ func IsValidType(native_str string) (result CWLType_Type_Basic, ok bool)

+ func (s CWLType_Type_Basic) Is_Type()

+ func (s CWLType_Type_Basic) Type2String() string

+ type CWL_array_type interface

+ Get_Array func() *[]CWLType

+ Is_CWL_array_type func()

type CWL_collection

+ Job_input_map *JobDocMap

+ func (c CWL_collection) GetCWLType(id string) (obj CWLType, err error)

+ func (c CWL_collection) GetCommandLineTool(id string) (obj *CommandLineTool, err error)

+ func (c CWL_collection) GetWorkflow(id string) (obj *Workflow, err error)

type CWL_minimal

+ func (c *CWL_minimal) Is_CWL_minimal()

type CWL_minimal_interface

+ Is_CWL_minimal func()

type CWL_object

+ func New_CWL_object(original interface{}, cwl_version CWLVersion) (obj CWL_object, err error)

+ type CWL_object_Impl struct

+ Class string

+ Id string

+ func (c *CWL_object_Impl) GetClass() string

+ func (c *CWL_object_Impl) GetId() string

+ func (c *CWL_object_Impl) SetId(id string)

+ type CWL_object_array []CWL_object

+ func NewCWL_object_array(original interface{}) (array CWL_object_array, err error)

type CommandLineTool

+ Doc string

+ Requirements []Requirement

+ func (c *CommandLineTool) Is_CWL_minimal()

+ func (c *CommandLineTool) Is_process()

type CommandOutputArraySchema

+ func NewCommandOutputArraySchemaFromInterface(original interface{}) (coas *CommandOutputArraySchema, err error)

+ func (c *CommandOutputArraySchema) Type2String() string

type CommandOutputEnumSchema

+ func NewCommandOutputEnumSchema(v map[string]interface{}) (schema *CommandOutputEnumSchema, err error)

+ func (c *CommandOutputEnumSchema) Is_Type()

+ func (c *CommandOutputEnumSchema) Type2String() string

+ type CommandOutputParameterTypeImpl struct

+ Type string

type CommandOutputRecordSchema

+ func NewCommandOutputRecordSchema(v interface{}) (schema *CommandOutputRecordSchema, err error)

+ func (c *CommandOutputRecordSchema) Is_Type()

+ func (c *CommandOutputRecordSchema) Type2String() string

type Directory

+ func NewDirectory() (d *Directory)

+ func NewDirectoryFromInterface(obj interface{}) (d *Directory, err error)

type DockerRequirement

+ func NewDockerRequirement(original interface{}) (r *DockerRequirement, err error)

+ type Double float64

+ func NewDouble(value float64) *Double

+ func NewDoubleFromInterface(native interface{}) (i *Double, err error)

+ func NewDoubleFromfloat64(value float64) (i *Double)

+ func (i *Double) GetClass() string

+ func (i *Double) GetId() string

+ func (i *Double) GetType() CWLType_Type

+ func (i *Double) Is_CWL_minimal()

+ func (i *Double) SetId(x string)

+ func (i *Double) String() string

+ type DummyRequirement struct

+ type Enum struct

+ Symbols []string

+ func (e *Enum) GetClass() string

+ type EnvVarRequirement struct

+ func NewEnvVarRequirement(original interface{}) (r *EnvVarRequirement, err error)

+ func (c EnvVarRequirement) GetId() string

+ type EnvironmentDef struct

type Expression

+ func NewExpression(original interface{}) (expression *Expression, err error)

type File

+ Location_url *url.URL

+ Type CWLType_Type

+ func (f *File) GetType() CWLType_Type

+ func (f *File) Is_CWLType()

+ func (f *File) Is_CWL_minimal()

+ type Float float32

+ func NewFloat(value float32) *Float

+ func NewFloatFromInterface(native interface{}) (i *Float, err error)

+ func NewFloatFromfloat32(value float32) (i *Float)

+ func (i *Float) GetClass() string

+ func (i *Float) GetId() string

+ func (i *Float) GetType() CWLType_Type

+ func (i *Float) Is_CWL_minimal()

+ func (i *Float) SetId(x string)

+ func (i *Float) String() string

+ type InitialWorkDirRequirement struct

+ Listing CWLType

+ func NewInitialWorkDirRequirement(original interface{}) (r *InitialWorkDirRequirement, err error)

+ func (c InitialWorkDirRequirement) GetId() string

+ type InlineJavascriptRequirement struct

+ ExpressionLib []string

+ func NewInlineJavascriptRequirement(original interface{}) (r *InlineJavascriptRequirement, err error)

+ func (c InlineJavascriptRequirement) GetId() string

+ type InputArraySchema struct

+ InputBinding *CommandLineBinding

+ func NewInputArraySchema() (coas *InputArraySchema)

+ func NewInputArraySchemaFromInterface(original interface{}) (coas *InputArraySchema, err error)

+ func (c *InputArraySchema) Type2String() string

type InputParameter

+ func (i InputParameter) Is_CWL_minimal()

type Int

+ func NewInt(id string, value int) *Int

+ func NewIntFromInterface(id string, native interface{}) (i *Int, err error)

+ func NewIntFromint(value int) (i *Int)

+ func (i *Int) GetType() CWLType_Type

+ func (i *Int) Is_CWL_minimal()

+ type JobDocMap map[string]CWLType

+ func (jd_map JobDocMap) GetArray() (result Job_document, err error)

type Job_document

+ func NewJob_documentFromNamedTypes(original interface{}) (job *Job_document, err error)

+ func ParseJobFile(job_file string) (job_input *Job_document, err error)

+ func (job_input *Job_document) GetMap() (job_input_map JobDocMap)

+ type MultipleInputFeatureRequirement struct

+ func NewMultipleInputFeatureRequirement(original interface{}) (r *MultipleInputFeatureRequirement, err error)

+ func (c MultipleInputFeatureRequirement) GetId() string

+ type NamedCWLType struct

+ Id string

+ Value CWLType

+ func NewNamedCWLType(id string, value CWLType) NamedCWLType

+ func NewNamedCWLTypeFromInterface(native interface{}) (cwl_obj_named NamedCWLType, err error)

+ type Null struct

+ func NewNull(id string) *Null

+ func (n *Null) GetClass() string

+ func (n *Null) String() string

+ type Number string

+ func NewNumber(id string, value string) (s *Number)

+ func NewNumberFromInterface(id string, native interface{}) (s *Number, err error)

+ func NewNumberFromstring(value string) (s *Number)

+ func (s *Number) GetClass() string

+ func (s *Number) GetId() string

+ func (s *Number) GetType() CWLType_Type

+ func (s *Number) Is_CWL_minimal()

+ func (s *Number) SetId(i string)

+ func (s *Number) String() string

type OutputArraySchema

+ OutputBinding *CommandOutputBinding

+ func NewOutputArraySchema() (coas *OutputArraySchema)

+ func NewOutputArraySchemaFromInterface(original interface{}) (coas *OutputArraySchema, err error)

+ func (c *OutputArraySchema) Type2String() string

type Process

+ Is_process func()

type ProcessPointer

+ func NewProcessPointer(original interface{}) (pp *ProcessPointer, err error)

+ func (p *ProcessPointer) Is_CWL_minimal()

+ func (p *ProcessPointer) Is_process()

+ type Record struct

+ Fields []CWLType

+ func NewRecord(id string, native interface{}) (record *Record, err error)

+ func (c *Record) String() string

+ func (r *Record) GetClass() string

+ func (r *Record) Is_CWL_minimal()

+ type ScatterFeatureRequirement struct

+ func NewScatterFeatureRequirement(original interface{}) (r *ScatterFeatureRequirement, err error)

+ func (c ScatterFeatureRequirement) GetId() string

type ShockRequirement

+ func NewShockRequirement(original interface{}) (r *ShockRequirement, err error)

type StepInputExpressionRequirement

+ func NewStepInputExpressionRequirement(original interface{}) (r *StepInputExpressionRequirement, err error)

type String

+ func NewString(id string, value string) (s *String)

+ func NewStringFromInterface(id string, native interface{}) (s *String, err error)

+ func NewStringFromstring(value string) (s *String)

+ func (s *String) GetType() CWLType_Type

+ func (s *String) Is_CWL_minimal()

type Workflow

+ func (w *Workflow) Is_Any()

+ func (w *Workflow) Is_CWL_minimal()

+ func (w *Workflow) Is_process()

type WorkflowStepInput

+ Ready bool

+ func (w WorkflowStepInput) Is_CWL_minimal()

type WorkflowStepOutput

+ func NewWorkflowStepOutput(original interface{}) (wso_ptr *WorkflowStepOutput, err error)

+ func NewWorkflowStepOutputArray(original interface{}) (new_array []WorkflowStepOutput, err error)

v0.9.51

Aug 10, 2017

v0.9.50

Jul 27, 2017

v0.9.49

Jul 26, 2017

v0.9.48

Jul 21, 2017

Changes in this version

+ const CWL_stderr

+ const CWL_stdout

+ func NewBaseCommandArray(original interface{}) (new_array []string, err error)

+ func NewCWLTypeArray(native interface{}) (cwl_array_ptr *[]CWLType, err error)

type CommandLineBinding

+ func NewCommandLineBinding(original interface{}) (clb *CommandLineBinding, err error)

+ func NewCommandLineBindingArray(original interface{}) (new_array []*CommandLineBinding, err error)

v0.9.46

Jul 6, 2017

v0.9.45

Jul 6, 2017

Changes in this version

+ const CWL_File

+ const CWL_boolean

+ const CWL_double

+ const CWL_float

+ const CWL_int

+ const CWL_long

+ const CWL_null

+ const CWL_string

+ func CreateCommandInputParameterTypeArray(v interface{}) (cipt_array_ptr *[]CommandInputParameterType, err error)

+ func EvaluateExpression(collection *CWL_collection, e cwl_types.Expression) string

+ func HasCommandInputParameterType(array *[]CommandInputParameterType, search_type string) (ok bool)

+ func HasInputParameterType(array *[]InputParameterType, search_type string) (ok bool)

+ func NewCommandOutputParameterArray(original interface{}) (copa *[]CommandOutputParameter, err error)

+ func NewCommandOutputParameterTypeArray(original interface{}) (copta *[]CommandOutputParameterType, err error)

+ func NewInputParameterTypeArray(original interface{}) (array_ptr *[]InputParameterType, err error)

+ func NewWorkflowOutputParameterArray(original interface{}) (new_array_ptr *[]WorkflowOutputParameter, err error)

+ func NewWorkflowOutputParameterTypeArray(original interface{}) (wopta_ptr *[]WorkflowOutputParameterType, err error)

type Any

+ func NewAny(native interface{}) (any Any, err error)

+ type Boolean struct

+ Id string

+ Value bool

+ func (s *Boolean) GetClass() string

+ func (s *Boolean) GetId() string

+ func (s *Boolean) SetId(id string)

+ func (s *Boolean) String() string

type CWLType

+ func NewCWLType(native interface{}) (cwl_type CWLType, err error)

+ type CWLType_Impl struct

type CWL_collection

+ Booleans map[string]*Boolean

+ Job_input *Job_document

+ type CWL_minimal struct

+ type CWL_minimal_interface interface

type CommandInputParameter

+ func NewCommandInputParameter(v interface{}) (input_parameter *CommandInputParameter, err error)

+ type CommandInputParameterType struct

+ Type string

+ func NewCommandInputParameterType(original interface{}) (cipt_ptr *CommandInputParameterType, err error)

type CommandLineTool

+ func NewCommandLineTool(object CWL_object_generic) (commandLineTool *CommandLineTool, err error)

+ type CommandOutputArraySchema struct

+ Items []string

+ Label string

+ OutputBinding *CommandOutputBinding

+ Type string

+ func NewCommandOutputArraySchema(original map[interface{}]interface{}) (coas *CommandOutputArraySchema, err error)

type CommandOutputBinding

+ func NewCommandOutputBinding(original interface{}) (commandOutputBinding *CommandOutputBinding, err error)

+ type CommandOutputEnumSchema struct

+ Label string

+ OutputBinding *CommandOutputBinding

+ Symbols []string

+ Type string

type CommandOutputParameter

+ func NewCommandOutputParameter(original interface{}) (output_parameter *CommandOutputParameter, err error)

+ type CommandOutputParameterType struct

+ CommandOutputArraySchema *CommandOutputArraySchema

+ CommandOutputRecordSchema *CommandOutputRecordSchema

+ Type string

+ func NewCommandOutputParameterType(original interface{}) (copt_ptr *CommandOutputParameterType, err error)

+ type CommandOutputRecordField struct

+ type CommandOutputRecordSchema struct

+ Fields []CommandOutputRecordField

+ Label string

+ Type string

type Empty

+ func NewEmpty(value interface{}) (obj_empty *Empty, err error)

type File

+ func NewFile(obj interface{}) (file File, err error)

type InputParameter

+ func NewInputParameter(original interface{}) (input_parameter *InputParameter, err error)

+ func NewInputParameterArray(original interface{}) (err error, new_array []InputParameter)

+ type InputParameterType struct

+ Type string

+ func NewInputParameterType(original interface{}) (ipt_ptr *InputParameterType, err error)

type Job_document

+ func NewJob_document(original interface{}) (job *Job_document, err error)

+ type OutputArraySchema struct

+ type OutputEnumSchema struct

+ type OutputRecordSchema struct

+ type Process interface

+ func NewProcess(original interface{}, collection *CWL_collection) (process Process, err error)

+ type ProcessPointer struct

+ Id string

+ Value string

+ func (p *ProcessPointer) GetClass() string

+ func (p *ProcessPointer) GetId() string

+ func (p *ProcessPointer) SetId(string)

type Requirement

+ func CreateRequirementDEPRECATED(class string, v interface{}) (requirement Requirement, err error)

type Workflow

+ func NewWorkflow(object CWL_object_generic, collection *CWL_collection) (workflow Workflow, err error)

type WorkflowOutputParameter

+ func NewWorkflowOutputParameter(original interface{}) (wop *WorkflowOutputParameter, err error)

+ type WorkflowOutputParameterType struct

+ OutputArraySchema *OutputArraySchema

+ OutputEnumSchema *OutputEnumSchema

+ OutputRecordSchema *OutputRecordSchema

+ Type string

+ func NewWorkflowOutputParameterType(original interface{}) (wopt_ptr *WorkflowOutputParameterType, err error)

type WorkflowStep

+ func NewWorkflowStep(original interface{}, collection *CWL_collection) (w *WorkflowStep, err error)

type WorkflowStepInput

+ func NewWorkflowStepInput(original interface{}) (input_parameter_ptr *WorkflowStepInput, err error)

v0.9.43

May 10, 2017

v0.9.36

Apr 17, 2017

v0.9.33

Mar 27, 2017

Changes in this version

+ func GetMapElement(m map[interface{}]interface{}, key string) (value interface{}, err error)

+ func ParseJob(collection *CWL_collection, job_file string) (err error)

+ func Parse_cwl_document(collection *CWL_collection, yaml_str string) (err error)

+ func Unmarshal(data []byte, v interface{}) (err error)

+ type Any interface

+ String func() string

+ type CWLType interface

+ type CWLVersion interface

+ type CWL_collection struct

+ All map[string]*CWL_object

+ CommandLineTools map[string]*CommandLineTool

+ Files map[string]*File

+ Ints map[string]*Int

+ Strings map[string]*String

+ WorkflowStepInputs map[string]*WorkflowStepInput

+ Workflows map[string]*Workflow

+ func NewCWL_collection() (collection CWL_collection)

+ func (c CWL_collection) Add(obj CWL_object) (err error)

+ func (c CWL_collection) Evaluate(raw string) (parsed string)

+ func (c CWL_collection) Get(id string) (obj *CWL_object, err error)

+ func (c CWL_collection) GetFile(id string) (obj *File, err error)

+ func (c CWL_collection) GetInt(id string) (obj *Int, err error)

+ func (c CWL_collection) GetString(id string) (obj *String, err error)

+ func (c CWL_collection) GetWorkflowStepInput(id string) (obj *WorkflowStepInput, err error)

+ type CWL_document_generic struct

+ CwlVersion string

+ Graph []CWL_object_generic

+ type CWL_location interface

+ GetLocation func() string

+ type CWL_object interface

+ GetClass func() string

+ GetId func() string

+ SetId func(string)

+ type CWL_object_generic map[string]interface

+ type CommandInputParameter struct

+ Default Any

+ Description string

+ Format string

+ Id string

+ InputBinding CommandLineBinding

+ Label string

+ SecondaryFiles []string

+ Streamable bool

+ Type string

+ func CreateCommandInputArray(original interface{}) (err error, new_array []CommandInputParameter)

+ type CommandLineBinding struct

+ ItemSeparator string

+ LoadContents bool

+ Position int

+ Prefix string

+ Separate string

+ ShellQuote bool

+ ValueFrom string

+ type CommandLineTool struct

+ Arguments []string

+ BaseCommand string

+ CwlVersion CWLVersion

+ Description string

+ Hints []Requirement

+ Id string

+ Inputs []CommandInputParameter

+ Label string

+ Outputs []CommandOutputParameter

+ PermanentFailCodes []int

+ Stdin string

+ Stdout string

+ SuccessCodes []int

+ TemporaryFailCodes []int

+ func (c *CommandLineTool) GetClass() string

+ func (c *CommandLineTool) GetId() string

+ func (c *CommandLineTool) SetId(id string)

+ type CommandOutputBinding struct

+ Glob []Expression

+ LoadContents bool

+ OutputEval Expression

+ type CommandOutputParameter struct

+ Description string

+ Format string

+ Id string

+ Label string

+ OutputBinding CommandOutputBinding

+ SecondaryFiles []Expression

+ Streamable bool

+ Type string

+ func CreateCommandOutputArray(original interface{}) (err error, new_array []CommandOutputParameter)

+ type Directory struct

+ Basename string

+ Id string

+ Listing []CWL_location

+ Location string

+ Path string

+ func (d Directory) GetClass() string

+ func (d Directory) GetId() string

+ func (d Directory) GetLocation() string

+ func (d Directory) String() string

+ type DockerRequirement struct

+ DockerFile string

+ DockerImageId string

+ DockerImport string

+ DockerLoad string

+ DockerPull string

+ func (c DockerRequirement) GetClass() string

+ func (c DockerRequirement) GetId() string

+ type Empty struct

+ Class string

+ Id string

+ func (e Empty) GetClass() string

+ func (e Empty) GetId() string

+ func (e Empty) SetId(id string)

+ func (e Empty) String() string

+ type Expression string

+ func (e Expression) Evaluate(collection *CWL_collection) string

+ func (e Expression) String() string

+ type File struct

+ Basename string

+ Bearer string

+ Checksum string

+ Contents string

+ Dirname string

+ Format string

+ Host string

+ Id string

+ Location string

+ Nameext string

+ Nameroot string

+ Node string

+ Path string

+ SecondaryFiles []CWL_location

+ Size int32

+ Token string

+ func MakeFile(id string, obj interface{}) (file File, err error)

+ func (f *File) GetClass() string

+ func (f *File) GetId() string

+ func (f *File) GetLocation() string

+ func (f *File) SetId(id string)

+ func (f *File) String() string

+ type InputParameter struct

+ Default Any

+ Doc string

+ Format string

+ Id string

+ InputBinding CommandLineBinding

+ Label string

+ SecondaryFiles []string

+ Streamable bool

+ Type string

+ func CreateInputParameterArray(original interface{}) (err error, new_array []InputParameter)

+ func (i InputParameter) GetClass() string

+ func (i InputParameter) GetId() string

+ func (i InputParameter) SetId(id string)

+ type Int struct

+ Id string

+ Value int

+ func (i *Int) GetClass() string

+ func (i *Int) GetId() string

+ func (i *Int) SetId(id string)

+ func (i *Int) String() string

+ type Job_document map[string]interface

+ type LinkMergeMethod string

+ type Requirement interface

+ GetClass func() string

+ func CreateRequirementArray(original interface{}) (err error, new_array []Requirement)

+ func NewRequirement(class string, obj interface{}) (r Requirement, err error)

+ type ShockRequirement struct

+ Host string

+ func (s ShockRequirement) GetClass() string

+ func (s ShockRequirement) GetId() string

+ type StepInputExpressionRequirement struct

+ func (c StepInputExpressionRequirement) GetClass() string

+ func (c StepInputExpressionRequirement) GetId() string

+ type String struct

+ Id string

+ Value string

+ func (s *String) GetClass() string

+ func (s *String) GetId() string

+ func (s *String) SetId(id string)

+ func (s *String) String() string

+ type Workflow struct

+ CwlVersion CWLVersion

+ Doc string

+ Hints []Requirement

+ Id string

+ Inputs []InputParameter

+ Label string

+ Metadata map[string]interface{}

+ Outputs []WorkflowOutputParameter

+ Requirements []Requirement

+ Steps []WorkflowStep

+ func (w *Workflow) GetClass() string

+ func (w *Workflow) GetId() string

+ func (w *Workflow) SetId(id string)

+ type WorkflowOutputParameter struct

+ Doc string

+ Format []Expression

+ Id string

+ Label string

+ LinkMerge LinkMergeMethod

+ OutputBinding CommandOutputBinding

+ OutputSource []string

+ SecondaryFiles []Expression

+ Streamable bool

+ Type string

+ func CreateWorkflowOutputParameterArray(original interface{}) (err error, new_array []WorkflowOutputParameter)

+ type WorkflowStep struct

+ Doc string

+ Hints []Requirement

+ Id string

+ In []WorkflowStepInput

+ Label string

+ Out []WorkflowStepOutput

+ Requirements []Requirement

+ Run string

+ Scatter string

+ ScatterMethod string

+ func CreateWorkflowStepsArray(original interface{}) (err error, new_array []WorkflowStep)

+ func (w WorkflowStep) GetOutput(id string) (output *WorkflowStepOutput, err error)

+ type WorkflowStepInput struct

+ Default Any

+ Id string

+ LinkMerge LinkMergeMethod

+ Source []string

+ ValueFrom Expression

+ func CreateWorkflowStepInputArray(original interface{}) (err error, new_array []WorkflowStepInput)

+ func (input WorkflowStepInput) GetObject(c *CWL_collection) (obj *CWL_object, err error)

+ func (w WorkflowStepInput) GetClass() string

+ func (w WorkflowStepInput) GetId() string

+ func (w WorkflowStepInput) SetId(id string)

+ type WorkflowStepOutput struct

+ Id string

+ func CreateWorkflowStepOutputArray(original interface{}) (err error, new_array []WorkflowStepOutput)

Incompatible versions in this module

v2.0.0-beta-77-g24ffd2d6+incompatible

May 13, 2019

v2.0.0-beta+incompatible

Feb 11, 2019

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