Directories
¶
| Path | Synopsis |
|---|---|
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TimeTree is a tool to manipulate time calibrated phylogenetic trees.
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TimeTree is a tool to manipulate time calibrated phylogenetic trees. |
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add
Package add implements a command to add a new taxon to a tree.
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Package add implements a command to add a new taxon to a tree. |
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draw
Package draw implements a command to output a phylogenetic tree from a TSV file into an SVG file.
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Package draw implements a command to output a phylogenetic tree from a TSV file into an SVG file. |
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format
Package format implements a command to format the trees in a tree file.
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Package format implements a command to format the trees in a tree file. |
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importcmd
Package importcmd implements a command to import phylogenetic trees from a newick file into tsv files.
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Package importcmd implements a command to import phylogenetic trees from a newick file into tsv files. |
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list
Package list implements a command to print a list of trees in a tree file.
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Package list implements a command to print a list of trees in a tree file. |
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newick
Package newick implements a command to output a phylogenetic tree from a TSV file into an equivalent Newick file.
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Package newick implements a command to output a phylogenetic tree from a TSV file into an equivalent Newick file. |
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set
Package set implements a command to set node ages for a list of trees.
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Package set implements a command to set node ages for a list of trees. |
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sim
Package sim implements a command to simulate a phylogenetic tree.
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Package sim implements a command to simulate a phylogenetic tree. |
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sub
Package sub implements a command to produce a sub-tree from a phylogenetic tree in a tsv file.
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Package sub implements a command to produce a sub-tree from a phylogenetic tree in a tsv file. |
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tax
Package tax implements a command to validate the terminal names for a list of trees.
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Package tax implements a command to validate the terminal names for a list of trees. |
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terms
Package terms implements a command to print the list of terminals in a tree file.
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Package terms implements a command to print the list of terminals in a tree file. |
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