Documentation
¶
Overview ¶
Package datatype provides interfaces for arbitrary datatypes supported in DVID. Each datatype implements the interface and handles conversion of its data into the key-value pairs or other base storage elements. Each data type provides a domain-specific HTTP API and possibly command-line actions.
Data types are declared in the main dvid.go file under imports. An example:
import (
// Declare the data types this DVID executable will support _ "github.com/janelia-flyem/dvid/datatype/imageblk" _ "github.com/janelia-flyem/dvid/datatype/labelblk" _ "randomsite.org/datatypes/myfoo"
)
Philosophy note: Rather than creating base packages that handle all sorts of similar data (e.g., uint8, uint16, rgab8, float32, n-dimensional float32), DVID code tries to be as simple as possible even if it means copying and replacing types. This will lend itself to using Go generate versus generics-style of programming. For now, though, it will simplify the code of each package.
Source Files
Directories
¶
| Path | Synopsis |
|---|---|
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Package annotation supports point annotation management and queries.
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Package annotation supports point annotation management and queries. |
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common
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downres
Package downres provides a system for computing multi-scale 3d arrays given mutations.
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Package downres provides a system for computing multi-scale 3d arrays given mutations. |
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labels
Package labels supports label-based data types like labelblk, labelvol, labelsurf, labelsz, etc.
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Package labels supports label-based data types like labelblk, labelvol, labelsurf, labelsz, etc. |
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proto
Package proto is a generated protocol buffer package.
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Package proto is a generated protocol buffer package. |
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Package googlevoxels implements DVID support for multi-scale tiles and volumes in XY, XZ, and YZ orientation using the Google BrainMaps API.
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Package googlevoxels implements DVID support for multi-scale tiles and volumes in XY, XZ, and YZ orientation using the Google BrainMaps API. |
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Package imageblk implements DVID support for image blocks of various formats (uint8, uint16, rgba8).
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Package imageblk implements DVID support for image blocks of various formats (uint8, uint16, rgba8). |
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Package imagetile implements DVID support for imagetiles in XY, XZ, and YZ orientation.
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Package imagetile implements DVID support for imagetiles in XY, XZ, and YZ orientation. |
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Package keyvalue implements DVID support for data using generic key-value.
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Package keyvalue implements DVID support for data using generic key-value. |
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Package labelarray handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label.
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Package labelarray handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label. |
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Package labelblk supports only label volumes.
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Package labelblk supports only label volumes. |
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Package labelgraph implements DVID support for data using the underlying graph storage engine.
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Package labelgraph implements DVID support for data using the underlying graph storage engine. |
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Package labelmap handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label.
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Package labelmap handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label. |
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Package labelsz supports ranking labels by # annotations of each type.
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Package labelsz supports ranking labels by # annotations of each type. |
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Package labelvol supports label-specific sparse volumes.
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Package labelvol supports label-specific sparse volumes. |
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Package multichan16 tailors the voxels data type for 16-bit fluorescent images with multiple channels that can be read from V3D Raw format.
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Package multichan16 tailors the voxels data type for 16-bit fluorescent images with multiple channels that can be read from V3D Raw format. |
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Package roi implements DVID support for Region-Of-Interest operations.
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Package roi implements DVID support for Region-Of-Interest operations. |
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Package tarsupervoxels implements DVID support for data blobs associated with supervoxels.
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Package tarsupervoxels implements DVID support for data blobs associated with supervoxels. |
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