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Published: Apr 12, 2024 License: MIT

Directories

Path Synopsis
ent
exact
package exact contains interface for exact-matching strings to known scientific names.
package exact contains interface for exact-matching strings to known scientific names.
fuzzy
package fuzzy contains interfaces and code to facilitate fuzzy-matching of name-strings to scientific names collected in gnames database.
package fuzzy contains interfaces and code to facilitate fuzzy-matching of name-strings to scientific names collected in gnames database.
matcher
package matcher is the central processing unit for matching name-strings to known scientific names.
package matcher is the central processing unit for matching name-strings to known scientific names.
virus
package virus contains an interface for matching strings to names of viruses, plasmids, prions and other non-cellular entities.
package virus contains an interface for matching strings to names of viruses, plasmids, prions and other non-cellular entities.
io
bloom
package bloom creates and serves bloom filters for stemmed canonical names, and names of viruses.
package bloom creates and serves bloom filters for stemmed canonical names, and names of viruses.
dbase
package dbase provides convenience methods for accessing PostgreSQL database.
package dbase provides convenience methods for accessing PostgreSQL database.
rest
package rest provides http REST interface to gnmatcher functionality.
package rest provides http REST interface to gnmatcher functionality.
trie
package trie implements FuzzyMatcher interface that is responsible for fuzzy-matching strings to canonical forms of scientific names.
package trie implements FuzzyMatcher interface that is responsible for fuzzy-matching strings to canonical forms of scientific names.

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