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bed

package

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Versions in this module

v1

v1.0.4

Oct 29, 2021

v1.0.3

Dec 1, 2020

v1.0.2

Jan 6, 2020

v1.0.1

Feb 16, 2017

v1.0.0

Jan 5, 2017

Changes in this version

+ var ErrBadBedType = errors.New("bed: bad bed type")

+ var ErrBadColorField = errors.New("bad color field")

+ var ErrBadStrand = errors.New("invalid strand")

+ var ErrBadStrandField = errors.New("bad strand field")

+ var ErrMissingBlockValues = errors.New("missing block values")

+ var ErrNoChromField = errors.New("no chrom field available")

+ type Bed interface

+ type Bed12 struct

+ BlockCount int

+ BlockSizes []int

+ BlockStarts []int

+ Chrom string

+ ChromEnd int

+ ChromStart int

+ FeatName string

+ FeatScore int

+ FeatStrand seq.Strand

+ Rgb color.RGBA

+ ThickEnd int

+ ThickStart int

+ func (b *Bed12) Description() string

+ func (b *Bed12) End() int

+ func (b *Bed12) Format(fs fmt.State, c rune)

+ func (b *Bed12) Len() int

+ func (b *Bed12) Location() feat.Feature

+ func (b *Bed12) Name() string

+ func (b *Bed12) Orientation() feat.Orientation

+ func (b *Bed12) Start() int

+ type Bed3 struct

+ Chrom string

+ ChromEnd int

+ ChromStart int

+ func (b *Bed3) Description() string

+ func (b *Bed3) End() int

+ func (b *Bed3) Format(fs fmt.State, c rune)

+ func (b *Bed3) Len() int

+ func (b *Bed3) Location() feat.Feature

+ func (b *Bed3) Name() string

+ func (b *Bed3) Start() int

+ type Bed4 struct

+ Chrom string

+ ChromEnd int

+ ChromStart int

+ FeatName string

+ func (b *Bed4) Description() string

+ func (b *Bed4) End() int

+ func (b *Bed4) Format(fs fmt.State, c rune)

+ func (b *Bed4) Len() int

+ func (b *Bed4) Location() feat.Feature

+ func (b *Bed4) Name() string

+ func (b *Bed4) Start() int

+ type Bed5 struct

+ Chrom string

+ ChromEnd int

+ ChromStart int

+ FeatName string

+ FeatScore int

+ func (b *Bed5) Description() string

+ func (b *Bed5) End() int

+ func (b *Bed5) Format(fs fmt.State, c rune)

+ func (b *Bed5) Len() int

+ func (b *Bed5) Location() feat.Feature

+ func (b *Bed5) Name() string

+ func (b *Bed5) Start() int

+ type Bed6 struct

+ Chrom string

+ ChromEnd int

+ ChromStart int

+ FeatName string

+ FeatScore int

+ FeatStrand seq.Strand

+ func (b *Bed6) Description() string

+ func (b *Bed6) End() int

+ func (b *Bed6) Format(fs fmt.State, c rune)

+ func (b *Bed6) Len() int

+ func (b *Bed6) Location() feat.Feature

+ func (b *Bed6) Name() string

+ func (b *Bed6) Orientation() feat.Orientation

+ func (b *Bed6) Start() int

+ type Chrom string

+ func (c Chrom) Description() string

+ func (c Chrom) End() int

+ func (c Chrom) Len() int

+ func (c Chrom) Location() feat.Feature

+ func (c Chrom) Name() string

+ func (c Chrom) Start() int

+ type Reader struct

+ BedType int

+ func NewReader(r io.Reader, b int) (*Reader, error)

+ func (r *Reader) Line() int

+ func (r *Reader) Read() (f feat.Feature, err error)

+ type Scorer interface

+ Score func() int

+ type Writer struct

+ BedType int

+ func NewWriter(w io.Writer, b int) (*Writer, error)

+ func (w *Writer) Write(f feat.Feature) (n int, err error)