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fasta

package

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Versions in this module

v0

v0.31.2

Oct 21, 2024

v0.31.1

Jan 31, 2024

v0.31.0

Jan 24, 2024

v0.30.0

Dec 11, 2023

Changes in this version

+ func Build(fastas []Fasta) ([]byte, error)

+ func ParseConcurrent(r io.Reader, sequences chan<- Fasta)

+ func ReadConcurrent(path string, sequences chan<- Fasta)

+ func ReadGzConcurrent(path string, sequences chan<- Fasta)

+ func Write(fastas []Fasta, path string) error

+ type Fasta struct

+ Name string

+ Sequence string

+ func Parse(r io.Reader) ([]Fasta, error)

+ func Read(path string) ([]Fasta, error)

+ func ReadGz(path string) ([]Fasta, error)

+ type Parser struct

+ func NewParser(r io.Reader, maxLineSize int) *Parser

+ func (parser *Parser) ParseAll() ([]Fasta, error)

+ func (parser *Parser) ParseByteLimited(byteLimit int64) (fastas []Fasta, bytesRead int64, err error)

+ func (parser *Parser) ParseN(maxSequences int) (fastas []Fasta, err error)

+ func (parser *Parser) ParseNext() (Fasta, int64, error)

+ func (parser *Parser) Reset(r io.Reader)