Documentation
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Overview ¶
Package pdb covers reading PDB coordinates. Go to a pdb website and download coordinates. pdb europe files are at http://www.ebi.ac.uk/pdbe/entry-files/download/5pti.cif or maybe http://www.ebi.ac.uk/pdbe/entry-files/download/5pti_updated.cif The main point is to visit the web page and return a reader that can be used like the file readers. The interface should be changed so we can specify the server we like.
Index ¶
Constants ¶
This section is empty.
Variables ¶
This section is empty.
Functions ¶
func NatomsTot ¶
NatomsTot returns the total number of valid atoms and the number of invalid atoms in a set of chains. We cannot write it as a method, since it would have to be in the cmmn sub package.
func ReadCoord ¶
ReadCoord takes a filename and attempts to read it as an mmcif file. Errors are returned the obvious way. During debugging, there can be a lot of output. This will be written to a file called outinfo. if outinfo is "", it will be trashed. If outinfo is "stdout", we write to standard output. Development ugliness - no longer handles http files.
Types ¶
This section is empty.
Source Files
Directories
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| Path | Synopsis |
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calpha will read pdb files and get some statistics about alpha carbons.
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calpha will read pdb files and get some statistics about alpha carbons. |
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Package pdb/cmmn has common definitions for coordinates and pdb files
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Package pdb/cmmn has common definitions for coordinates and pdb files |
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Package mmcif is the main package.
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Package mmcif is the main package. |