transform

Documentation

Index

• func Complement(sequence string) string
• func ComplementBase(basePair rune) rune
• func GetKmerTable(k int, sequence string) map[string]bool
• func Reverse(sequence string) string
• func ReverseComplement(sequence string) string
• func Transcription(sequence string) string

Examples

• Complement
• Reverse
• ReverseComplement
• Transcription

Functions

func Complement

func Complement(sequence string) string

Complement takes the complement of a sequence.

Example

sequence := "GATTACA"
complement := Complement(sequence)
fmt.Println(complement)

Output:

CTAATGT

func ComplementBase

func ComplementBase(basePair rune) rune

ComplementBase accepts a base pair and returns its complement base pair

func GetKmerTable

func GetKmerTable(k int, sequence string) map[string]bool

getKmerTable receive a sequence string and a k int and generates a set of unique k-mers

func Reverse

func Reverse(sequence string) string

Reverse takes the reverse of a sequence.

Example

sequence := "GATTACA"
reverse := Reverse(sequence)
fmt.Println(reverse)

Output:

ACATTAG

func ReverseComplement

func ReverseComplement(sequence string) string

ReverseComplement takes the reverse complement of a sequence.

Example

sequence := "GATTACA"
reverseComplement := ReverseComplement(sequence)
fmt.Println(reverseComplement)

Output:

TGTAATC

func Transcription

func Transcription(sequence string) string

Example

sequence := "GATTACA"
transcription := Transcription(sequence)
fmt.Println(transcription)

Output:

CUAAUGU