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fasta

package

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Versions in this module

v0

v0.0.4

Mar 13, 2023

v0.0.3

Jun 5, 2022

v0.0.2

May 23, 2022

v0.0.1

May 23, 2022

Changes in this version

+ func Analyse(f Fasta, enzyme digest.Enzyme)

+ func FuzzyNameFile(name string, dir string) (string, error)

+ func ProteotypicPeps(fastas []Fasta, enzyme digest.Enzyme) []proteoTypic

+ func UniprotURL(name string) (string, error)

+ func UpdateFASTA(name string, dir string) error

+ func WriteProteotypicPeps(fp *os.File, pts []proteoTypic)

+ type Fasta struct

+ func Read(reader io.Reader) (Fasta, error)

+ func ReadFiltered(reader io.Reader, filter Filter) (Fasta, error)

+ func (f *Fasta) Prots() []Prot

+ func (f *Fasta) Write(writer io.Writer) error

+ type Filter func(Prot) bool

+ type Prot struct

+ func (p *Prot) Description() string

+ func (p *Prot) ID() string

+ func (p *Prot) Sequence() string